Flags on public buildings were raised at 9am on Wednesday as the period of mourning for Sheikh Khalifa ended.
The Ministry of Presidential Affairs said the 40-day period concluded on Tuesday night.
Sheikh Khalifa died on May 13 at the age of 73.
Work across the country was suspended for three days immediately after his death.
Flags had remained at half-staff since. This period was intended as a mark of respect and life across the UAE took on a more sombre tone.
Sheikh Khalifa was the country's second president after UAE Founding Father, the late Sheikh Zayed bin Sultan Al Nahyan.
Sheikh Mohamed was elected President by the Federal Supreme Council last month.
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The internal combustion engine is facing a watershed moment – major manufacturer Volvo is to stop producing petroleum-powered vehicles by 2021 and countries in Europe, including the UK, have vowed to ban their sale before 2040. The National takes a look at the story of one of the most successful technologies of the last 100 years and how it has impacted life in the UAE.
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Read part one: how cars came to the UAE
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Our legal columnist
Name: Yousef Al Bahar
Advocate at Al Bahar & Associate Advocates and Legal Consultants, established in 1994
Education: Mr Al Bahar was born in 1979 and graduated in 2008 from the Judicial Institute. He took after his father, who was one of the first Emirati lawyers
COMPANY PROFILE
Name: Kumulus Water
Started: 2021
Founders: Iheb Triki and Mohamed Ali Abid
Based: Tunisia
Sector: Water technology
Number of staff: 22
Investment raised: $4 million